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Data Production and Analysis in Population Genomics Methods and Protocols /

Population genomics is a recently emerged discipline, which aims at understanding how evolutionary processes influence genetic variation across genomes. Today, in the era of cheaper next-generation sequencing, it is no longer as daunting to obtain whole genome data for any species of interest and po...

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Detalhes bibliográficos
Autor Corporativo: SpringerLink (Online service)
Outros Autores: Pompanon, François. (Editor, http://id.loc.gov/vocabulary/relators/edt), Bonin, Aurélie. (Editor, http://id.loc.gov/vocabulary/relators/edt)
Formato: Recurso Eletrônico livro eletrônico
Idioma:English
Publicado em: Totowa, NJ : Humana Press : Imprint: Humana, 2012.
Edição:1st ed. 2012.
coleção:Methods in Molecular Biology, 888
Assuntos:
Human genetics.
Nucleic acids.
Biostatistics.
Human Genetics.
Nucleic Acid Chemistry.
Acesso em linha:https://doi.org/10.1007/978-1-61779-870-2
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Sumário:
  • Sampling in Landscape Genomics
  • oligoTag: A Program for Designing Sets of Tags for Next-Generation Sequencing of Multiplexed Samples
  • SNP Discovery in Non-Model Organisms Using 454 Next Generation Sequencing
  • ISIF (In Silico Fingerprinting): A User-Friendly in silico AFLP Program
  • Diversity Arrays Technology (DArT) – A Generic Genome Profiling Technology on Open Platforms
  • Two Methods to Easily Obtain Nucleotide Sequences from AFLP Loci of Interest
  • Roche Genome Sequencer FLX Based High-Throughput Sequencing of Ancient DNA
  • Preparation of Normalized cDNA Libraries for 454 Titanium Transcriptome Sequencing
  • RAD Paired-End Sequencing for Local de novo Assembly and SNP Discovery in Non-Model Organisms
  • Automated Scoring of AFLPs Using RawGeno v 2.0, A Free R CRAN Library
  • Haplotype Inference
  • Allele Identification in Assembled Genomic Sequence Datasets
  • Multiple-Testing in Large-Scale Genetic Studies
  • Population Genomic Analysis of Model and Non-Model Species Using Sequenced RAD Tags
  • Analysis and Management of Gene and Allelic Diversity in Subdivided Populations Using the Software Program METAPOP
  • DETSEL: An R-Package to Detect Marker Loci Responding to Selection
  • Use of Qualitative Environmental and Phenotypic Variables in the Context of Allele Distribution Models: Detecting Signatures of Selection in the Genome of Lake Victoria Cichilds
  • Genomic Scan as a Tool for Assessing the Genetic Component of Phenotypic Variance in Wild Populations.

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