Globins and other nitric oxide-reactive proteins /
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| Format: | Book |
| Language: | English |
| Published: |
San Diego, Calif. :
Academic,
2008.
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| Series: | Methods in enzymology ;
v. 437 pt.B |
| Subjects: | |
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Table of Contents:
- Pt. A. Section I. Nitric oxide: Chemical and analytic methods. 1. Chemistry of nitric oxide and related species / Martin N. Hughes
- 2. Delivery of nitric oxide for analysis of the function of cytochrome c / Lindsay J. Cole, Wilhelmina M. Huston, James W.B. Moir
- 3. Preparation and purification of NO gas and the use of NO releasers: the application of NO donors and other agents of nitrosative stress in biological systems / Ruboma G. Aga, Martin N. Hughes
- 4. Chemistry of peroxynitrite: implications for biological activity / Sara Goldstein, Gabor Mer�enyi
- 5. Nitric oxide selective electrodes / Ian R. Davies, Xueji Zhang
- 6. NO, NO2, and O2 reaction kinetics: scope and limitations of the Clark electrode / L.A.M. Pouvreau ... [et al.]
- 7. Chemiluminescence quantification of NO and its derivatives in liquid samples / Jay R. Laver, T�ania M. Tevanin, Robert C. Read
- Section II. Bacterial and archaeal hemoglobins. 8. Interactions of NO with hemoglobin: from microbes to man / Michael Angelo ... [et al.]
- 9. Survey of methods for the purification of microbial flavohemoglobins / Megan E.S. Lewis ... [et al.]
- 10. Structural studies on flavohemoglobins / Andrea Ilari, Alberto Boffi
- 11. Flavohemoglobin of Staphylococcus aureus / L�igia S. Nobre, Vera L Gon�calves, L�igia M. Saraiva
- 12. Assay and characterization of NO dioxygenase activity of flavohemoglobins / Paul R. Gardner
- 13. Globin interactions with lipids and membranes / Antonio Di Giulio, Alessandra Bonamore
- 14. Assessment of biotechnologically relevant characteristics of heterologous hemoglobins in E. coli / Pauli T. Kallio ... [et al.]
- 15. Applications of the VHb gene vgb for improved microbial fermentation processes / Xiao-Xing Wei, Guo-Qiang Chen
- 16. Expression and purification of Cgb and Ctb, the NO-inducible globins of the foodborne bacterial pathogen C. jejuni / James L. Pickford ... [et al.]
- Mapping heme-ligand tunnels in Group I truncated(2/2) hemoglobins / Alessandra Pesce ... [et al.]
- 18. Scavenging of reactive nitrogen species by mycobacterial truncated hemoglobins / Paolo Ascenzi, Paolo Visca
- Section III. Other hemoglobins. 19. Expression, purification, and crystallization of neuro- and cytoglobin / Sylvia Dewilde ... [et al.]
- 20. Measurement of distal histidine coordination equilibrium and kinetics in hexacoordinate hemoglobins / Benoit J. Smagghe, Puspita Halder, Mark S. Hargrove
- 21. Purification of Class 1 plant hemoglobins and examination of their functional properties / Abir U. Igamberdiev, Robert D. Hill
- 22. Use of in silico (Computer) methods to predict and analyze the tertiary structure of plant hemoglobins /Sabarinathan Kuttalingam Gopalasubramaniam .. [et al]
- 23. Self-induction method to produce high quantities of recombinant functional flavo-leghemoglobin reductase / Estibaliz Urarte ... [et al.] 24. Spectroscopic and crystallographic characterization of bis-hystidyl adducts in tetrameric hemoglobins / Alessandro Vergara ... [et al.]
- 25. Dinitrosyl iron complexes bind with homoglobin as markers of oxidative stress / Konstantin B. Shumaev ... [et al.]
- 26. Linked analysis of large cooperative, allosteric systems: the case of the giant HBL hemoglobins / Nadja Hellmann, Roy E. Weber, Heinz Decker
- 27. Mass mapping of large globin complexes by scanning transmission electron microscopy / Joseph S. Wall ... [et al.]
- 28. Mini-hemoglobins from nemertean worms / Thomas L. Vandergon, Austen F. Riggs
- 29. Comparative and evolutional genomics of globin genes in fish / Enrico Negrisolo ... [et al.]
- 30. Inferring evolutin of fish proteins: the globin case study / Agnes Detta�i ... [et al.]
- 31. Tracing globin phylogeny using PSIBLAST searches based on groups of sequences / Serge N. Vinogradov. Pt. B. Section I. Nitric oxide-metabolising and detoxifying enxymes. 1. Structural studies in flavodiiron proteins / Jo�ao B. Vicente ... [et al.]
- 2. Biochemical, spectroscopic, and thermodynamic properties of flavodiiron proteins / Jo�ao B. Vicente ... [et al.]
- 3. Kinetic charactrizatin of the Eschericia coli nitric oxide reductase flavorubredoxin / Jo{228)ap B. Vicente ... [et al.]
- 4. Eschericia coli cytocrome c nitrite reductase NrfA / Thomas A. Clarke ... [et al.]
- 5. Respiratory nitric oxide reductase (NorBC) paracoccus denitifcans / Sarah J. Field ... [et al.]
- 6. Redox-controlled dinitrosyl formation at the diiron-oxo center of NorA / Rainer Cramm, Katja Strube
- 7. Purification and functional analysis of fungal nitric oxide reductase cytochrome P450nor / Li Zhang, Hirofumi Shoun
- 8. Quantitative approach to nitric oxide inhibition of terminal oxidases of the respiratory chain / Maria G. Mason ... [et al.]. Section II. Sensor proteins. 9. Cloning, expression, and purification of the N-terminal heme-binding domain of glovin-coupled sensors / Jennifer A. Saito, Tracey Allen K. Freitas, Maqsudul Alam
- 10. Oxygen-sensing histidine-protein kinases: assays of ligand binding and turnover of response-regulator substrates / Marie-Alda Gilles-Gonzalez ... [et al.]
- 11. Reactions of nitric oxide and oxygen with the regulator of fumarate and nitrate reduction, a global transcriptional regulator, during anaerobic growth of eschericia coli / Jason C. Crack ... [et al.]
- 12. Genome-wide identification of binding sites for the nitric oxide-sensitive transcriptional regulator NsrR / Sam Efromovich ... [et al.]
- 13. Charactorization of the nitric oxide-reactive transcriptional activator NorR / Beno�it D'Autr�eaux ... [et al.]. Section III. Advanced spectroscopic methods. 14. Hemoglobins from Mycobacterium tuberculosis and Campylobactr jejui: a comparative study with resonance raman spectroscopy / Changyuan Lu ... [et al.]
- 15. Power of using continuous-wave and pulsed electron paramagnetic resonance methods for the structural analysis of ferric forms and nitric oxide-ligated ferrous forms of globins / Sabine Van Doorslaer, Filip Desmet
- 16. Oxygen bindingto heme proteins in solution, encapsulated in silica gels, and in the crystalline state / Luca Rondam ... [et al.]
- 17. Characterization of ligand migration mechanisms inside hemoglobins from the analysis of geminate rebinding kinetics / Stefania Abbruzzetti ... [et al.]
- 18. Ligand dynamics in heme proteins observed by fourier transform infrared spectroscopy at cryogenic temperatures / Karin Nienhaus, G. Ulrich Nienhaus
- 19. Time-resolved x-ray crystallography of heme proteins / Vukics �Srajer, William E. Royer, Jr.
- 20. Structural dynamics of myoglobin / M. Brunori, D. Bourgeois, B. Vallone
- 21. Use of the conjugate peak refinement algorithm for identification of ligand-binding pathways in globins / Stephen D. Golden, Kenneth W. Olsen
- 22. Finding gas migration pathways in proteins using implicit ligand sampling / Jordi Cohen, Kenneth W. Olsen, Klaus Schulten
- 23. Identification of ligand-binding pathways in truncated hemoglobins using locally enhanced sampling molecular dynamics / Stephen D. Golden, Kenneth W. Olsen
- 24. Nitric oxide reactivity with globins as investigated through computer simulation / Marcelo A. Marti ... [et al.]
- 25. Microbial responses to nitric oxide and nitrosative stress: growth, "omic," and physiological methods / Steven T. Pullan ... [et al.]
- 26. Analysis of nitric oxide-dependent antimicrobial actions in macrophages and mice / Andr�es Vazquez-Torres ... [et al.]
- 27. Measuring nitric oxide metabolism inthe pathogen Neisseria meningitidis / Melanie J. Thomson, Tania M. Stevanin, James B.W. Moir
- 28. Localization of S-Nitrosothiols and assay of nitric oxide synthase and S-Nitrosoglutathione reductase activity in plants / Francisco J. Corpas ... [et al.]
- 29. Methods for nitric oxide detection during plant-pathogen interactions / E. Vandelle, M. Delledonne
- 30.
- Bioimaging techniques for subcellular localization of plant hemoglobins and measurement of hemoglobin-dependent nitric oxide scavenging in planta / Kim H. Hebelstrup, erik {162]stergaard-jensen, Robert D. Hill
- 31. Use of recombinant iron-superoxide dismutase as a marker of nitrative stress / Est�ibaliz Larrainzar ... [et al.]